5-(hydroxymethyl)-2-furaldehyde
Everything that changed this flow. Back to the flow
f7118aa2-9453-4b26-b052-cb67860c2e58
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 3 catalogue altLabel value(s): 'Aes 103' (grade code), 'BAX 555' (grade code), 'NSC 40738' (registry code) |
| cas_match_labels | 1 | consensus_match | group_key=5-(hydroxymethyl)-2-furaldehyde||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'67-47-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-b35c3ad7d431785f: {'67-47-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| prefLabel | 1 | bootstrap_labels | Bootstrapped prefLabel from legacy name field |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['67-47-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_412516']; candidate_pubchem_cids=[237332]; selected_pubchem_cids=[237332]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
19| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 6,602 | bootstrap_labels | prefLabel | — | [{"@value":"5-(hydroxymethyl)-2-furaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:… | Bootstrapped prefLabel from legacy name field |
| 6,603 | bootstrap_labels | name | 5-(hydroxymethyl)-2-furaldehyde | — | Purged legacy name field to enforce prefLabel usage |
| 25,057 | bootstrap_labels | synonyms | ["5-(hydroxymethyl)-2-furaldehyde","2-furancarboxaldehyde,5-(hydroxymethyl)-","5-(hydroxymethyl)-2-furaldehyd","5-(hydr… | [] | Removed legacy synonyms field in favor of structured labels |
| 198,228 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","indoor":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 198,229 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor |
| 215,544 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 233,516 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 233,517 | enrich_references | skos_definition | — | [{"@value":"A member of the class of furans that is furan which is substituted at positions 2 and 5 by formyl and hydro… | Merged ChEBI/PubChem definitions into skos:definition |
| 233,518 | enrich_references | references | [] | [{"@id":"gmelin:278693","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"con… | Added references with provenance; cas_numbers=['67-47-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_412516']; candidate_pubchem_cids=[237332]; selected_pubchem_cids=[237332]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,142 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | rdkit_pre_consensus from 'C1=C(OC(=C1)C=O)CO'; added: monoisotopic_mass |
| 255,191 | chebi_altlabels | altLabel | [] | [{"@value":"2-Hydroxymethyl-5-furfural","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Added 24 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,005 | consensus_match | altLabel | [{"@value":"2-Hydroxymethyl-5-furfural","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"2-Hydroxymethyl-5-furfural","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | group_key=5-(hydroxymethyl)-2-furaldehyde||dimension=Environmental > media=Water > water_body=Unknown; cas=67-47-0; added Common Chemistry CAS names as altLabel: 2-Formyl-5-hydroxymethylfuran, 2-Furaldehyde, 5-(hydroxymethyl)-, 2-Furancarboxaldehyde, 5-(hydroxymethyl)-, 5-(Hydroxymethyl)furancarboxaldehyde, 5-Hydroxymethylfurfurol, Aes 103, BAX 555, Hydroxymethylfuraldehyde, NSC 40738; object_uuid=fo-b35c3ad7d431785f |
| 263,006 | consensus_match | cas_match_labels | — | {"67-47-0":"exactMatch"} | group_key=5-(hydroxymethyl)-2-furaldehyde||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'67-47-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-b35c3ad7d431785f: {'67-47-0': 'exactMatch'} |
| 275,280 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '5-(hydroxymethyl)-2-furaldehyde' |
| 281,786 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | rdkit_post_consensus from 'O=Cc1ccc(CO)o1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,601 | strip_catalogue_altlabels | altLabel | [{"@value":"2-Hydroxymethyl-5-furfural","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"2-Hydroxymethyl-5-furfural","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Removed 3 catalogue altLabel value(s): 'Aes 103' (grade code), 'BAX 555' (grade code), 'NSC 40738' (registry code) |
| 380,148 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/f7118aa2-9453-… | associations resolved on the elementary layer |
| 389,582 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H6O3"],"… | typed the way the ontology types it |
| 396,795 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
19 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/6602 | prefLabel | ef:agent/bootstrap_labels | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v0 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v1 |
| ef:activity/change/20260821T1554374006150000/6603 | name | ef:agent/bootstrap_labels | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v1 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v2 |
| ef:activity/change/20260821T1554374006150000/25057 | synonyms | ef:agent/bootstrap_labels | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v2 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v3 |
| ef:activity/change/20260821T1554374006150000/198228 | context | ef:agent/default_context_mapping | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v3 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v4 |
| ef:activity/change/20260821T1554374006150000/198229 | context_iri | ef:agent/default_context_mapping | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v4 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v5 |
| ef:activity/change/20260821T1554374006150000/215544 | unit_iri | ef:agent/unit_normalization | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v5 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v6 |
| ef:activity/change/20260821T1554374006150000/233516 | properties | ef:agent/enrich_references | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v6 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v7 |
| ef:activity/change/20260821T1554374006150000/233517 | skos_definition | ef:agent/enrich_references | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v7 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v8 |
| ef:activity/change/20260821T1554374006150000/233518 | references | ef:agent/enrich_references | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v8 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v9 |
| ef:activity/change/20260821T1554374006150000/250142 | properties | ef:agent/rdkit_pre_consensus | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v9 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v10 |
| ef:activity/change/20260821T1554374006150000/255191 | altLabel | ef:agent/chebi_altlabels | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v10 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v11 |
| ef:activity/change/20260821T1554374006150000/263005 | altLabel | ef:agent/consensus_match | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v11 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v12 |
| ef:activity/change/20260821T1554374006150000/263006 | cas_match_labels | ef:agent/consensus_match | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v12 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v13 |
| ef:activity/change/20260821T1554374006150000/275280 | properties | ef:agent/opsin_iupac | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v13 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v14 |
| ef:activity/change/20260821T1554374006150000/281786 | properties | ef:agent/rdkit_post_consensus | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v14 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v15 |
| ef:activity/change/20260821T1554374006150000/288601 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v15 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v16 |
| ef:activity/change/20260821T1554374006150000/380148 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v16 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v17 |
| ef:activity/change/20260821T1554374006150000/389582 | properties | ef:agent/normalise_property_values | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v17 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v18 |
| ef:activity/change/20260821T1554374006150000/396795 | types | ef:agent/link_flows_to_their_substance | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v18 | ef:flow/f7118aa2-9453-4b26-b052-cb67860c2e58/v19 |