Consensus flow list

By field

12 fields
Field Changes Written by Latest note
properties 7 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass the substance's answer, copied onto its flow
altLabel 4 chebi_altlabels, consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=22541-77-1; cc_chebi_agreed_name='Vanadium(3+)'; object_uuid=fo-dbed6cc9cce7bb19
cas_match_labels 1 consensus_match group_key=vanadium,ion||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi']; cas_sources={'22541-77-1': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-dbed6cc9cce7bb19: {'22541-77-1': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['22541-77-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49948']; candidate_pubchem_cids=[23990]; selected_pubchem_cids=[23990]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
17,284 bootstrap_labels prefLabel [{"@value":"Vanadium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Bootstrapped prefLabel from legacy name field
17,285 bootstrap_labels name Vanadium, ion Purged legacy name field to enforce prefLabel usage
198,780 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
198,781 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
219,009 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,053 normalize_name_case prefLabel [{"@value":"Vanadium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… [{"@value":"Vanadium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
243,396 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V"],"attes… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
243,397 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
243,398 enrich_references references [] [{"@id":"gmelin:16007","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['22541-77-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49948']; candidate_pubchem_cids=[23990]; selected_pubchem_cids=[23990]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
252,993 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V"],"attes… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… rdkit_pre_consensus from '[V+3]'; added: molecular_formula, monoisotopic_mass
256,661 chebi_altlabels altLabel [] [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
273,246 consensus_match prefLabel [{"@value":"Vanadium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… [{"@value":"Vanadium(3+)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"co… cas=22541-77-1; cc_chebi_agreed_name='Vanadium(3+)'; object_uuid=fo-dbed6cc9cce7bb19
273,247 consensus_match altLabel [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… cas=22541-77-1; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-dbed6cc9cce7bb19
273,248 consensus_match altLabel [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… group_key=vanadium,ion||dimension=Environmental > media=Water > water_body=Long-term; cas=22541-77-1; added Common Chemistry CAS names as altLabel: V<sup>3+</sup>, Vanadium 3+ ion, Vanadium III, Vanadium ion(3+), Vanadium, ion (V<sup>3+</sup>); object_uuid=fo-dbed6cc9cce7bb19
273,249 consensus_match cas_match_labels {"22541-77-1":"exactMatch"} group_key=vanadium,ion||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi']; cas_sources={'22541-77-1': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-dbed6cc9cce7bb19: {'22541-77-1': 'exactMatch'}
278,210 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Vanadium(3+)'
284,952 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… rdkit_post_consensus from '[V+3]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,128 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
292,950 dedupe_altlabels altLabel [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… Deduplicated altLabel values and removed entries matching prefLabel
380,444 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/f8152976-6dfb-… associations resolved on the elementary layer
392,565 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… typed the way the ontology types it
401,091 link_flows_to_their_substance types ["https://w3id.org/chemrof/AtomCation"] the substance's answer, copied onto its flow
401,092 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… the substance's answer, copied onto its flow

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/17284 prefLabel ef:agent/bootstrap_labels ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v0 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v1
ef:activity/change/20260820T0738569779880000/17285 name ef:agent/bootstrap_labels ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v1 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v2
ef:activity/change/20260820T0738569779880000/198780 context ef:agent/default_context_mapping ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v2 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v3
ef:activity/change/20260820T0738569779880000/198781 context_iri ef:agent/default_context_mapping ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v3 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v4
ef:activity/change/20260820T0738569779880000/219009 unit_iri ef:agent/unit_normalization ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v4 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v5
ef:activity/change/20260820T0738569779880000/225053 prefLabel ef:agent/normalize_name_case ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v5 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v6
ef:activity/change/20260820T0738569779880000/243396 properties ef:agent/enrich_references ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v6 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v7
ef:activity/change/20260820T0738569779880000/243397 skos_definition ef:agent/enrich_references ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v7 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v8
ef:activity/change/20260820T0738569779880000/243398 references ef:agent/enrich_references ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v8 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v9
ef:activity/change/20260820T0738569779880000/252993 properties ef:agent/rdkit_pre_consensus ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v9 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v10
ef:activity/change/20260820T0738569779880000/256661 altLabel ef:agent/chebi_altlabels ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v10 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v11
ef:activity/change/20260820T0738569779880000/273246 prefLabel ef:agent/consensus_match ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v11 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v12
ef:activity/change/20260820T0738569779880000/273247 altLabel ef:agent/consensus_match ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v12 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v13
ef:activity/change/20260820T0738569779880000/273248 altLabel ef:agent/consensus_match ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v13 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v14
ef:activity/change/20260820T0738569779880000/273249 cas_match_labels ef:agent/consensus_match ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v14 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v15
ef:activity/change/20260820T0738569779880000/278210 properties ef:agent/opsin_iupac ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v15 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v16
ef:activity/change/20260820T0738569779880000/284952 properties ef:agent/rdkit_post_consensus ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v16 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v17
ef:activity/change/20260820T0738569779880000/287128 properties ef:agent/withhold_ambiguous_mass ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v17 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v18
ef:activity/change/20260820T0738569779880000/292950 altLabel ef:agent/dedupe_altlabels ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v18 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v19
ef:activity/change/20260820T0738569779880000/380444 concept_associations ef:agent/carry_associations_onto_flows ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v19 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v20
ef:activity/change/20260820T0738569779880000/392565 properties ef:agent/normalise_property_values ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v20 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v21
ef:activity/change/20260820T0738569779880000/401091 types ef:agent/link_flows_to_their_substance ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v21 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v22
ef:activity/change/20260820T0738569779880000/401092 properties ef:agent/link_flows_to_their_substance ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v22 ef:flow/f8152976-6dfb-4f09-ad89-c485d1473826/v23

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