Nadide
Everything that changed this flow. Back to the flow
fd78fd0f-f2c1-4b83-864d-a426a59a64a0
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, link_flows_to_their_substance, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 20272' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=nadide||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'53-84-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-158a89a605610796: {'53-84-9': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['53-84-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15846', 'http://purl.obolibrary.org/obo/CHEBI_44215']; candidate_pubchem_cids=[925, 926, 5892, 5893, 68239, 447862, 4231851, 5288979, 6419894, 10897651, 15938971, 16212831, 25162925, 73200894, 122172989, 127255362, 129894444, 134720244]; selected_pubchem_cids=[5892]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 16,137 | bootstrap_labels | prefLabel | — | [{"@value":"nadide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Bootstrapped prefLabel from legacy name field |
| 16,138 | bootstrap_labels | name | nadide | — | Purged legacy name field to enforce prefLabel usage |
| 16,139 | bootstrap_labels | synonyms | ["nadide","1-[(2r,3r,4s,5r)-5-{[({[(2r,3s,4r,5r)-5-(6-amino-9h-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)ph… | [] | Removed legacy synonyms field in favor of structured labels |
| 201,982 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 201,983 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 218,639 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,802 | normalize_name_case | prefLabel | [{"@value":"nadide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Nadide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 242,368 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 242,369 | enrich_references | skos_definition | — | [{"@value":"The oxidised form of nicotinamide adenine dinucleotide found in all living cells. In metabolism, NAD+ is in… | Merged ChEBI/PubChem definitions into skos:definition |
| 242,370 | enrich_references | references | [] | [{"@id":"beilstein:3584133","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['53-84-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15846', 'http://purl.obolibrary.org/obo/CHEBI_44215']; candidate_pubchem_cids=[925, 926, 5892, 5893, 68239, 447862, 4231851, 5288979, 6419894, 10897651, 15938971, 16212831, 25162925, 73200894, 122172989, 127255362, 129894444, 134720244]; selected_pubchem_cids=[5892]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,697 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | rdkit_pre_consensus from 'C1=CC(=C[N+](=C1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)N4C=NC5=C(N=CN=C54)N)O)O)O)O)C(=O)N'; added: inchi2d_string, monoisotopic_mass |
| 256,522 | chebi_altlabels | altLabel | [] | [{"@value":"DPN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | Added 13 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 269,693 | consensus_match | altLabel | [{"@value":"DPN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | [{"@value":"DPN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | group_key=nadide||dimension=Environmental > media=Ground > geography=Unknown; cas=53-84-9; added Common Chemistry CAS names as altLabel: Adenine-nicotinamide dinucleotide, Adenosine 5′-(trihydrogen diphosphate), <em>P</em>′→5′-ester with 3-(aminocarbonyl)-1-β-<span class="text-smallcaps">D</span>-ribofuranosylpyridinium hydroxide, inner salt, Adenosine 5′-(trihydrogen diphosphate), <em>P</em>′→5′-ester with 3-(aminocarbonyl)-1-β-<span class="text-smallcaps">D</span>-ribofuranosylpyridinium, inner salt, CO-I, Codehydrase I, Enzopride, MeSH ID: D009243, NSC 20272, Nicotinamide-adenine dinucleotide, Oxidized diphosphopyridine nucleotide, Pyridinium, 3-carbamoyl-1-β-<span class="text-smallcaps">D</span>-ribofuranosyl-, hydroxide, 5′→5′-ester with adenosine 5′-(trihydrogen pyrophosphate), inner salt, β-Diphosphopyridine nucleotide, β-NAD, β-NAD<sup>+</sup>, β-Nicotinamide adenine dinucleotide, β-Nicotinamide adenine dinucleotide hydrate; object_uuid=fo-158a89a605610796 |
| 269,694 | consensus_match | cas_match_labels | — | {"53-84-9":"exactMatch"} | group_key=nadide||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'53-84-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-158a89a605610796: {'53-84-9': 'exactMatch'} |
| 284,615 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | rdkit_post_consensus from 'C1=CC(=C[N+](=C1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)N4C=NC5=C(N=CN=C54)N)O)O)O)O)C(=O)N'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,532 | strip_catalogue_altlabels | altLabel | [{"@value":"DPN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | [{"@value":"DPN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | Removed 1 catalogue altLabel value(s): 'NSC 20272' (registry code) |
| 382,025 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fd78fd0f-f2c1-… | associations resolved on the elementary layer |
| 392,255 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | typed the way the ontology types it |
| 400,628 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/Zwitterion"] | the substance's answer, copied onto its flow |
| 400,629 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C21H27N7O1… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/16137 | prefLabel | ef:agent/bootstrap_labels | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v0 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v1 |
| ef:activity/change/20260822T0600486828500000/16138 | name | ef:agent/bootstrap_labels | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v1 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v2 |
| ef:activity/change/20260822T0600486828500000/16139 | synonyms | ef:agent/bootstrap_labels | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v2 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v3 |
| ef:activity/change/20260822T0600486828500000/201982 | context | ef:agent/default_context_mapping | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v3 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v4 |
| ef:activity/change/20260822T0600486828500000/201983 | context_iri | ef:agent/default_context_mapping | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v4 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v5 |
| ef:activity/change/20260822T0600486828500000/218639 | unit_iri | ef:agent/unit_normalization | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v5 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v6 |
| ef:activity/change/20260822T0600486828500000/224802 | prefLabel | ef:agent/normalize_name_case | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v6 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v7 |
| ef:activity/change/20260822T0600486828500000/242368 | properties | ef:agent/enrich_references | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v7 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v8 |
| ef:activity/change/20260822T0600486828500000/242369 | skos_definition | ef:agent/enrich_references | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v8 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v9 |
| ef:activity/change/20260822T0600486828500000/242370 | references | ef:agent/enrich_references | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v9 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v10 |
| ef:activity/change/20260822T0600486828500000/252697 | properties | ef:agent/rdkit_pre_consensus | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v10 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v11 |
| ef:activity/change/20260822T0600486828500000/256522 | altLabel | ef:agent/chebi_altlabels | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v11 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v12 |
| ef:activity/change/20260822T0600486828500000/269693 | altLabel | ef:agent/consensus_match | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v12 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v13 |
| ef:activity/change/20260822T0600486828500000/269694 | cas_match_labels | ef:agent/consensus_match | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v13 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v14 |
| ef:activity/change/20260822T0600486828500000/284615 | properties | ef:agent/rdkit_post_consensus | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v14 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v15 |
| ef:activity/change/20260822T0600486828500000/290532 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v15 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v16 |
| ef:activity/change/20260822T0600486828500000/382025 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v16 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v17 |
| ef:activity/change/20260822T0600486828500000/392255 | properties | ef:agent/normalise_property_values | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v17 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v18 |
| ef:activity/change/20260822T0600486828500000/400628 | types | ef:agent/link_flows_to_their_substance | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v18 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v19 |
| ef:activity/change/20260822T0600486828500000/400629 | properties | ef:agent/link_flows_to_their_substance | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v19 | ef:flow/fd78fd0f-f2c1-4b83-864d-a426a59a64a0/v20 |