Brightway Flows 1.0
GitHub

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 32868' (registry code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=carbarsone||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'121-59-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ef357c59ddceabbf: {'121-59-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['121-59-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_94806']; candidate_pubchem_cids=[8480]; selected_pubchem_cids=[8480]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

20
# Step Field From To Why
1,271 bootstrap_labels prefLabel — [{"@value":"carbarsone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… Bootstrapped prefLabel from legacy name field
1,272 bootstrap_labels name carbarsone — Purged legacy name field to enforce prefLabel usage
1,273 bootstrap_labels synonyms ["organic","carbarsone"] [] Removed legacy synonyms field in favor of structured labels
202,295 default_context_mapping context — {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
202,296 default_context_mapping context_iri — https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
213,762 unit_normalization unit_iri — https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
221,388 normalize_name_case prefLabel [{"@value":"carbarsone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… [{"@value":"Carbarsone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"bri… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
228,401 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
228,402 enrich_references skos_definition — [] Merged ChEBI/PubChem definitions into skos:definition
228,403 enrich_references references [] [{"@id":"drugcentral:3065","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['121-59-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_94806']; candidate_pubchem_cids=[8480]; selected_pubchem_cids=[8480]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
248,675 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… rdkit_pre_consensus from 'C1=CC(=CC=C1NC(=O)N)[As](=O)(O)O'; added: monoisotopic_mass
254,536 chebi_altlabels altLabel [] [{"@value":"amebarsene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"brig… Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
264,851 consensus_match altLabel [{"@value":"amebarsene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"brig… [{"@value":"amebarsene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"brig… group_key=carbarsone||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); cas=121-59-5; added Common Chemistry CAS names as altLabel: 4-Carbamylaminophenylarsonic acid, 4-Ureidobenzenearsonic acid, 4-Ureidophenylarsonic acid, <em>N</em>-Carbamoylarsanilic acid, <em>N</em>-Carbamylarsanilic acid, <em>p</em>-Arsonophenylurea, <em>p</em>-Carbamidobenzenearsonic acid, Amabevan, Ameban, Amibiarson, Aminarsone, Aminoarson, Arsanilic acid, <em>N</em>-carbamoyl-, Arsonic acid, [4-[(aminocarbonyl)amino]phenyl]-, Carb-O-Sep, Histocarb, Kutan, NSC 32868, [4-[(Aminocarbonyl)amino]phenyl]arsonic acid; object_uuid=fo-ef357c59ddceabbf
264,852 consensus_match cas_match_labels — {"121-59-5":"exactMatch"} group_key=carbarsone||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'121-59-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ef357c59ddceabbf: {'121-59-5': 'exactMatch'}
273,797 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'p-Ureidobenzenearsonic acid'
280,181 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… rdkit_post_consensus from 'NC(=O)Nc1ccc([As](=O)(O)O)cc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,528 strip_catalogue_altlabels altLabel [{"@value":"amebarsene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"brig… [{"@value":"amebarsene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"brig… Removed 1 catalogue altLabel value(s): 'NSC 32868' (registry code)
382,213 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fdecf352-53b4-… associations resolved on the elementary layer
388,104 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H9AsN2O4… typed the way the ontology types it
394,700 link_flows_to_their_substance types — ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

20 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20261019T0712047113160000/1271 prefLabel ef:agent/bootstrap_labels ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v0 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v1
ef:activity/change/20261019T0712047113160000/1272 name ef:agent/bootstrap_labels ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v1 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v2
ef:activity/change/20261019T0712047113160000/1273 synonyms ef:agent/bootstrap_labels ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v2 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v3
ef:activity/change/20261019T0712047113160000/202295 context ef:agent/default_context_mapping ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v3 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v4
ef:activity/change/20261019T0712047113160000/202296 context_iri ef:agent/default_context_mapping ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v4 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v5
ef:activity/change/20261019T0712047113160000/213762 unit_iri ef:agent/unit_normalization ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v5 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v6
ef:activity/change/20261019T0712047113160000/221388 prefLabel ef:agent/normalize_name_case ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v6 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v7
ef:activity/change/20261019T0712047113160000/228401 properties ef:agent/enrich_references ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v7 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v8
ef:activity/change/20261019T0712047113160000/228402 skos_definition ef:agent/enrich_references ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v8 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v9
ef:activity/change/20261019T0712047113160000/228403 references ef:agent/enrich_references ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v9 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v10
ef:activity/change/20261019T0712047113160000/248675 properties ef:agent/rdkit_pre_consensus ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v10 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v11
ef:activity/change/20261019T0712047113160000/254536 altLabel ef:agent/chebi_altlabels ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v11 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v12
ef:activity/change/20261019T0712047113160000/264851 altLabel ef:agent/consensus_match ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v12 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v13
ef:activity/change/20261019T0712047113160000/264852 cas_match_labels ef:agent/consensus_match ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v13 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v14
ef:activity/change/20261019T0712047113160000/273797 properties ef:agent/opsin_iupac ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v14 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v15
ef:activity/change/20261019T0712047113160000/280181 properties ef:agent/rdkit_post_consensus ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v15 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v16
ef:activity/change/20261019T0712047113160000/287528 altLabel ef:agent/strip_catalogue_altlabels ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v16 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v17
ef:activity/change/20261019T0712047113160000/382213 concept_associations ef:agent/carry_associations_onto_flows ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v17 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v18
ef:activity/change/20261019T0712047113160000/388104 properties ef:agent/normalise_property_values ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v18 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v19
ef:activity/change/20261019T0712047113160000/394700 types ef:agent/link_flows_to_their_substance ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v19 ef:flow/fdecf352-53b4-4359-a834-dfa49e306d54/v20

Keyboard

?
Show or hide this map
/
Focus search
Esc
Close