Consensus flow list

By field

15 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels, strip_cross_object_altlabels Removed 7 catalogue altLabel value(s): 'A 3000' (grade code), 'F 30' (grade code), 'F 30 (chlorocarbon)' (grade code), 'HCC 30' (grade code), 'NSC 406122' (registry code), 'R 30' (grade code), 'R 30 (refrigerant)' (grade code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=dichloromethane||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'75-09-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-067b5f2cd91dfd1d: {'75-09-2': 'exactMatch'}
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
dcterms_is_replaced_by 1 pipeline.deduplication duplicate of 36c044bd-9a60-4473-82e6-555a94b753ed
is_replaced_by_uuid 1 pipeline.deduplication duplicate of 36c044bd-9a60-4473-82e6-555a94b753ed
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
owl_deprecated 1 pipeline.deduplication duplicate of 36c044bd-9a60-4473-82e6-555a94b753ed
references 1 enrich_references Added references with provenance; cas_numbers=['75-09-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15767']; candidate_pubchem_cids=[6344]; selected_pubchem_cids=[6344]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
7,711 bootstrap_labels prefLabel [{"@value":"dichloromethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Bootstrapped prefLabel from legacy name field
7,712 bootstrap_labels name dichloromethane Purged legacy name field to enforce prefLabel usage
7,713 bootstrap_labels synonyms ["300062X","AB1004055","AC1L1MBL","AC1O5DP8","AC1Q3UP8","Aerothene MM","AmbotzSOL-002","Bichloride, Methylene","CH2Cl2"… [] Removed legacy synonyms field in favor of structured labels
73,174 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
73,175 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-noag Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
213,868 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,904 normalize_name_case prefLabel [{"@value":"dichloromethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… [{"@value":"Dichloromethane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
228,701 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
228,702 enrich_references skos_definition [{"@value":"A member of the class of chloromethanes that is methane in which two of the hydrogens have been replaced by… Merged ChEBI/PubChem definitions into skos:definition
228,703 enrich_references references [] [{"@id":"gmelin:1302","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… Added references with provenance; cas_numbers=['75-09-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15767']; candidate_pubchem_cids=[6344]; selected_pubchem_cids=[6344]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
248,760 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… rdkit_pre_consensus from 'C(Cl)Cl'; added: monoisotopic_mass
255,431 chebi_altlabels altLabel [] [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
257,442 strip_cross_object_altlabels altLabel [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'Methylene chloride'
265,857 consensus_match altLabel [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… group_key=dichloromethane||dimension=Environmental > media=Air > indoor=Unknown; cas=75-09-2; added Common Chemistry CAS names as altLabel: A 3000, Aerothene MM, F 30, F 30 (chlorocarbon), Freon 30, HCC 30, Khladon 30, MeSH ID: D008752, Metaclen, Methaclean U, Methane, dichloro-, Methylene chloride, NSC 406122, Narkotil, R 30, R 30 (refrigerant), Solaesthin, Soleana VDA, Solmethine; object_uuid=fo-067b5f2cd91dfd1d
265,858 consensus_match cas_match_labels {"75-09-2":"exactMatch"} group_key=dichloromethane||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'75-09-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-067b5f2cd91dfd1d: {'75-09-2': 'exactMatch'}
273,899 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Dichloromethane'
280,289 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… rdkit_post_consensus from 'ClCCl'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
288,866 strip_catalogue_altlabels altLabel [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"DCM","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Removed 7 catalogue altLabel value(s): 'A 3000' (grade code), 'F 30' (grade code), 'F 30 (chlorocarbon)' (grade code), 'HCC 30' (grade code), 'NSC 406122' (registry code), 'R 30' (grade code), 'R 30 (refrigerant)' (grade code)
293,655 pipeline.deduplication owl_deprecated yes duplicate of 36c044bd-9a60-4473-82e6-555a94b753ed
293,656 pipeline.deduplication dcterms_is_replaced_by urn:uuid:36c044bd-9a60-4473-82e6-555a94b753ed duplicate of 36c044bd-9a60-4473-82e6-555a94b753ed
293,657 pipeline.deduplication is_replaced_by_uuid 36c044bd-9a60-4473-82e6-555a94b753ed duplicate of 36c044bd-9a60-4473-82e6-555a94b753ed
388,188 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2Cl2"],"… typed the way the ontology types it
394,809 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1555490862250000/7711 prefLabel ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v0 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v1
ef:activity/change/20260820T1555490862250000/7712 name ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v1 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v2
ef:activity/change/20260820T1555490862250000/7713 synonyms ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v2 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v3
ef:activity/change/20260820T1555490862250000/73174 context ef:agent/default_context_mapping ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v3 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v4
ef:activity/change/20260820T1555490862250000/73175 context_iri ef:agent/default_context_mapping ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v4 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v5
ef:activity/change/20260820T1555490862250000/213868 unit_iri ef:agent/unit_normalization ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v5 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v6
ef:activity/change/20260820T1555490862250000/222904 prefLabel ef:agent/normalize_name_case ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v6 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v7
ef:activity/change/20260820T1555490862250000/228701 properties ef:agent/enrich_references ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v7 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v8
ef:activity/change/20260820T1555490862250000/228702 skos_definition ef:agent/enrich_references ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v8 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v9
ef:activity/change/20260820T1555490862250000/228703 references ef:agent/enrich_references ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v9 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v10
ef:activity/change/20260820T1555490862250000/248760 properties ef:agent/rdkit_pre_consensus ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v10 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v11
ef:activity/change/20260820T1555490862250000/255431 altLabel ef:agent/chebi_altlabels ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v11 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v12
ef:activity/change/20260820T1555490862250000/257442 altLabel ef:agent/strip_cross_object_altlabels ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v12 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v13
ef:activity/change/20260820T1555490862250000/265857 altLabel ef:agent/consensus_match ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v13 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v14
ef:activity/change/20260820T1555490862250000/265858 cas_match_labels ef:agent/consensus_match ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v14 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v15
ef:activity/change/20260820T1555490862250000/273899 properties ef:agent/opsin_iupac ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v15 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v16
ef:activity/change/20260820T1555490862250000/280289 properties ef:agent/rdkit_post_consensus ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v16 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v17
ef:activity/change/20260820T1555490862250000/288866 altLabel ef:agent/strip_catalogue_altlabels ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v17 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v18
ef:activity/change/20260820T1555490862250000/293655 owl_deprecated ef:agent/pipeline.deduplication ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v18 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v19
ef:activity/change/20260820T1555490862250000/293656 dcterms_is_replaced_by ef:agent/pipeline.deduplication ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v19 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v20
ef:activity/change/20260820T1555490862250000/293657 is_replaced_by_uuid ef:agent/pipeline.deduplication ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v20 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v21
ef:activity/change/20260820T1555490862250000/388188 properties ef:agent/normalise_property_values ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v21 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v22
ef:activity/change/20260820T1555490862250000/394809 types ef:agent/link_flows_to_their_substance ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v22 ef:flow/fe0acd60-3ddc-11dd-9efc-0050c2490048/v23

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