Symphytine
Everything that changed this flow. Back to the flow
fe0acd60-3ddc-11dd-a213-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=symphytine||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'pubchem']; cas_sources={'22571-95-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-6a084a46511d323b: {'22571-95-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['22571-95-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9375']; candidate_pubchem_cids=[150812, 4581422, 5281753, 5281754, 5284460, 6155875, 137955446]; selected_pubchem_cids=[5281754]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 21,679 | bootstrap_labels | prefLabel | — | [{"@value":"symphytine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 21,680 | bootstrap_labels | name | symphytine | — | Purged legacy name field to enforce prefLabel usage |
| 21,681 | bootstrap_labels | synonyms | ["(1R,7aR)-7-({[2,3-dihydroxy-2-(1-methylethyl)butanoyl]oxy}methyl)-2,3,5,7a-tetrahydro-1H-pyrrolizin-1-yl (2E)-2-methy… | [] | Removed legacy synonyms field in favor of structured labels |
| 204,296 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 204,297 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 220,282 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,990 | normalize_name_case | prefLabel | [{"@value":"symphytine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Symphytine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 246,947 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 246,948 | enrich_references | skos_definition | — | [{"@value":"A but-2-enoate ester obtained by formal condensation of the carboxy group of (2E)-2-methylbut-2-enoic acid… | Merged ChEBI/PubChem definitions into skos:definition |
| 246,949 | enrich_references | references | [] | [{"@id":"agr:IND90038070","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… | Added references with provenance; cas_numbers=['22571-95-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_9375']; candidate_pubchem_cids=[150812, 4581422, 5281753, 5281754, 5284460, 6155875, 137955446]; selected_pubchem_cids=[5281754]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,022 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | rdkit_pre_consensus from 'C/C=C(\\C)/C(=O)O[C@@H]1CCN2[C@@H]1C(=CC2)COC(=O)[C@@]([C@H](C)O)(C(C)C)O'; added: monoisotopic_mass |
| 257,116 | chebi_altlabels | altLabel | [] | [{"@value":"(1R,7aR)-7-({[(2S,3S)-2,3-dihydroxy-2-isopropylbutanoyl]oxy}methyl)-2,3,5,7a-tetrahydro-1H-pyrrolizin-1-yl… | Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,215 | consensus_match | altLabel | [{"@value":"(1R,7aR)-7-({[(2S,3S)-2,3-dihydroxy-2-isopropylbutanoyl]oxy}methyl)-2,3,5,7a-tetrahydro-1H-pyrrolizin-1-yl… | [{"@value":"(1R,7aR)-7-({[(2S,3S)-2,3-dihydroxy-2-isopropylbutanoyl]oxy}methyl)-2,3,5,7a-tetrahydro-1H-pyrrolizin-1-yl… | group_key=symphytine||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=22571-95-5; added Common Chemistry CAS names as altLabel: 2-Butenoic acid, 2-methyl-, (1<em>R</em>,7a<em>R</em>)-7-[[(2<em>S</em>,3<em>S</em>)-2,3-dihydroxy-2-(1-methylethyl)-1-oxobutoxy]methyl]-2,3,5,7a-tetrahydro-1<em>H</em>-pyrrolizin-1-yl ester, (2<em>E</em>)-, 2-Butenoic acid, 2-methyl-, 7-[[2,3-dihydroxy-2-(1-methylethyl)-1-oxobutoxy]methyl]-2,3,5,7a-tetrahydro-1<em>H</em>-pyrrolizin-1-yl ester, [1<em>R</em>-[1α(<em>E</em>),7(2<em>S</em>*,3<em>S</em>*),7aβ]]-, 7-Tiglyl-9-viridiflorylretronecine; object_uuid=fo-6a084a46511d323b |
| 272,216 | consensus_match | cas_match_labels | — | {"22571-95-5":"exactMatch"} | group_key=symphytine||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'pubchem']; cas_sources={'22571-95-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-6a084a46511d323b: {'22571-95-5': 'exactMatch'} |
| 279,219 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(1R,7aR)-7-({[(2S,3S)-2,3-dihydroxy-2-isopropylbutanoyl]oxy}methyl)-2,3,5,7a-tetrahydro-1H-pyrrolizin-1-yl (2E)-2-methylbut-2-enoate' |
| 286,077 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | rdkit_post_consensus from 'C/C=C(\\C)C(=O)O[C@@H]1CCN2CC=C(COC(=O)[C@](O)(C(C)C)[C@H](C)O)[C@H]12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 293,136 | dedupe_altlabels | altLabel | [{"@value":"(1R,7aR)-7-({[(2S,3S)-2,3-dihydroxy-2-isopropylbutanoyl]oxy}methyl)-2,3,5,7a-tetrahydro-1H-pyrrolizin-1-yl… | [{"@value":"(1R,7aR)-7-({[(2S,3S)-2,3-dihydroxy-2-isopropylbutanoyl]oxy}methyl)-2,3,5,7a-tetrahydro-1H-pyrrolizin-1-yl… | Deduplicated altLabel values and removed entries matching prefLabel |
| 383,182 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fe0acd60-3ddc-… | associations resolved on the elementary layer |
| 393,606 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | typed the way the ontology types it |
| 402,689 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 402,690 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H31NO6"… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/21679 | prefLabel | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v0 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v1 |
| ef:activity/change/20260821T1554374006150000/21680 | name | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v1 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v2 |
| ef:activity/change/20260821T1554374006150000/21681 | synonyms | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v2 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v3 |
| ef:activity/change/20260821T1554374006150000/204296 | context | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v3 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v4 |
| ef:activity/change/20260821T1554374006150000/204297 | context_iri | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v4 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v5 |
| ef:activity/change/20260821T1554374006150000/220282 | unit_iri | ef:agent/unit_normalization | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v5 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v6 |
| ef:activity/change/20260821T1554374006150000/225990 | prefLabel | ef:agent/normalize_name_case | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v6 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v7 |
| ef:activity/change/20260821T1554374006150000/246947 | properties | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v7 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v8 |
| ef:activity/change/20260821T1554374006150000/246948 | skos_definition | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v8 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v9 |
| ef:activity/change/20260821T1554374006150000/246949 | references | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v9 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v10 |
| ef:activity/change/20260821T1554374006150000/254022 | properties | ef:agent/rdkit_pre_consensus | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v10 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v11 |
| ef:activity/change/20260821T1554374006150000/257116 | altLabel | ef:agent/chebi_altlabels | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v11 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v12 |
| ef:activity/change/20260821T1554374006150000/272215 | altLabel | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v12 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v13 |
| ef:activity/change/20260821T1554374006150000/272216 | cas_match_labels | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v13 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v14 |
| ef:activity/change/20260821T1554374006150000/279219 | properties | ef:agent/opsin_iupac | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v14 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v15 |
| ef:activity/change/20260821T1554374006150000/286077 | properties | ef:agent/rdkit_post_consensus | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v15 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v16 |
| ef:activity/change/20260821T1554374006150000/293136 | altLabel | ef:agent/dedupe_altlabels | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v16 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v17 |
| ef:activity/change/20260821T1554374006150000/383182 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v17 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v18 |
| ef:activity/change/20260821T1554374006150000/393606 | properties | ef:agent/normalise_property_values | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v18 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v19 |
| ef:activity/change/20260821T1554374006150000/402689 | types | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v19 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v20 |
| ef:activity/change/20260821T1554374006150000/402690 | properties | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v20 | ef:flow/fe0acd60-3ddc-11dd-a213-0050c2490048/v21 |