Glyphosate
Everything that changed this flow. Back to the flow
fe0acd60-3ddc-11dd-a648-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels, strip_cross_object_altlabels | Removed 6 catalogue altLabel value(s): 'Glifosan 747' (trade name), 'HM 2028' (grade code), 'MON 2139' (grade code), 'MON 3539' (grade code), 'MON 6000' (grade code), 'NSC 151063' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=glyphosate||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'1071-83-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4f88f10adb76d33d: {'1071-83-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['1071-83-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27744']; candidate_pubchem_cids=[3496, 2763851, 5288464, 10743500, 21998236, 24776433, 46780452]; selected_pubchem_cids=[3496]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 15,530 | bootstrap_labels | prefLabel | — | [{"@value":"glyphosate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 15,531 | bootstrap_labels | name | glyphosate | — | Purged legacy name field to enforce prefLabel usage |
| 15,532 | bootstrap_labels | synonyms | ["((phosphonomethyl)amino)acetic acid","2-(phosphono-methylamino)-acetic acid","2-(phosphonomethylamino)acetic acid","2… | [] | Removed legacy synonyms field in favor of structured labels |
| 206,394 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 206,395 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 218,447 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,666 | normalize_name_case | prefLabel | [{"@value":"glyphosate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Glyphosate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 241,824 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 241,825 | enrich_references | skos_definition | — | [{"@value":"A phosphonic acid resulting from the formal oxidative coupling of the methyl group of methylphosphonic acid… | Merged ChEBI/PubChem definitions into skos:definition |
| 241,826 | enrich_references | references | [] | [{"@id":"beilstein:2045054","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['1071-83-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27744']; candidate_pubchem_cids=[3496, 2763851, 5288464, 10743500, 21998236, 24776433, 46780452]; selected_pubchem_cids=[3496]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,539 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | rdkit_pre_consensus from 'C(C(=O)O)NCP(=O)(O)O'; added: monoisotopic_mass |
| 256,447 | chebi_altlabels | altLabel | [] | [{"@value":"N-(phosphonomethyl)glycine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Added 2 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 257,454 | strip_cross_object_altlabels | altLabel | [{"@value":"N-(phosphonomethyl)glycine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"N-(phosphonomethyl)glycine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'Roundup' |
| 267,455 | consensus_match | altLabel | [{"@value":"N-(phosphonomethyl)glycine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"N-(phosphonomethyl)glycine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | group_key=glyphosate||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=1071-83-6; added Common Chemistry CAS names as altLabel: (Carboxymethylamino)methylphosphonic acid, 2-[(Phosphonomethyl)amino]acetic acid, <em>N</em>-Phosphomethylglycine, Accord 4L, Accord XRT II, Atila, Buccaneer, C-K Yuyos FAV, Carboxymethylaminomethanephosphinic acid, Faena, Folusen, Forsat, Gibson, Glialka, Glialka 36, Glifoglex, Glifosan 747, Gliz, Gliz 480CS, GlyGran, Glycine, <em>N</em>-(phosphonomethyl)-, Glydon, Glyfos, Glyphodin A, Glyphomax, Glyphosate CT, Glyphosate atar 48, Green Fire 50SL, Ground Bio, HM 2028, Herbatop, Hockey, Kickdown, Klinik, Lancer, Lancer (herbicide), Leone, MON 2139, MON 3539, MON 6000, NSC 151063, Phorsat, Phosphonomethylglycine, Phosphonomethyliminoacetic acid, Rebel Garden, Roundup 360 Plus, Safal, Scout, Scout (herbicide), Silglif, Solar (herbicide), Total, Weedmaster 50SL; object_uuid=fo-4f88f10adb76d33d |
| 267,456 | consensus_match | cas_match_labels | — | {"1071-83-6":"exactMatch"} | group_key=glyphosate||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'1071-83-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4f88f10adb76d33d: {'1071-83-6': 'exactMatch'} |
| 277,742 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'N-(phosphonomethyl)glycine' |
| 284,438 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | rdkit_post_consensus from 'O=C(O)CNCP(=O)(O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,417 | strip_catalogue_altlabels | altLabel | [{"@value":"N-(phosphonomethyl)glycine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"N-(phosphonomethyl)glycine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Removed 6 catalogue altLabel value(s): 'Glifosan 747' (trade name), 'HM 2028' (grade code), 'MON 2139' (grade code), 'MON 3539' (grade code), 'MON 6000' (grade code), 'NSC 151063' (registry code) |
| 384,225 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fe0acd60-3ddc-… | associations resolved on the elementary layer |
| 392,089 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H8NO5P"]… | typed the way the ontology types it |
| 400,393 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 400,394 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_33286","rdfs:label":"agrochemical","http://www.w3.org/2004/02/skos/core#d… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1812399309960000/15530 | prefLabel | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v0 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v1 |
| ef:activity/change/20260820T1812399309960000/15531 | name | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v1 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v2 |
| ef:activity/change/20260820T1812399309960000/15532 | synonyms | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v2 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v3 |
| ef:activity/change/20260820T1812399309960000/206394 | context | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v3 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v4 |
| ef:activity/change/20260820T1812399309960000/206395 | context_iri | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v4 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v5 |
| ef:activity/change/20260820T1812399309960000/218447 | unit_iri | ef:agent/unit_normalization | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v5 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v6 |
| ef:activity/change/20260820T1812399309960000/224666 | prefLabel | ef:agent/normalize_name_case | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v6 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v7 |
| ef:activity/change/20260820T1812399309960000/241824 | properties | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v7 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v8 |
| ef:activity/change/20260820T1812399309960000/241825 | skos_definition | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v8 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v9 |
| ef:activity/change/20260820T1812399309960000/241826 | references | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v9 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v10 |
| ef:activity/change/20260820T1812399309960000/252539 | properties | ef:agent/rdkit_pre_consensus | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v10 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v11 |
| ef:activity/change/20260820T1812399309960000/256447 | altLabel | ef:agent/chebi_altlabels | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v11 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v12 |
| ef:activity/change/20260820T1812399309960000/257454 | altLabel | ef:agent/strip_cross_object_altlabels | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v12 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v13 |
| ef:activity/change/20260820T1812399309960000/267455 | altLabel | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v13 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v14 |
| ef:activity/change/20260820T1812399309960000/267456 | cas_match_labels | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v14 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v15 |
| ef:activity/change/20260820T1812399309960000/277742 | properties | ef:agent/opsin_iupac | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v15 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v16 |
| ef:activity/change/20260820T1812399309960000/284438 | properties | ef:agent/rdkit_post_consensus | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v16 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v17 |
| ef:activity/change/20260820T1812399309960000/290417 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v17 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v18 |
| ef:activity/change/20260820T1812399309960000/384225 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v18 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v19 |
| ef:activity/change/20260820T1812399309960000/392089 | properties | ef:agent/normalise_property_values | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v19 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v20 |
| ef:activity/change/20260820T1812399309960000/400393 | types | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v20 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v21 |
| ef:activity/change/20260820T1812399309960000/400394 | roles | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v21 | ef:flow/fe0acd60-3ddc-11dd-a648-0050c2490048/v22 |