Iodine
Everything that changed this flow. Back to the flow
fe0acd60-3ddc-11dd-a7c1-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'NSC 42355' (registry code), 'eXIA 160' (grade code) |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Iodine |
| cas_match_labels | 1 | consensus_match | group_key=iodine||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7553-56-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-351f592b1a189cf7: {'7553-56-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 231-442-4 from CAS 7553-56-2 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7553-56-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17606']; candidate_pubchem_cids=[807, 14284, 24841, 5360629]; selected_pubchem_cids=[807]; formula_similarity_expected=['I']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,620 | bootstrap_labels | prefLabel | — | [{"@value":"iodine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Bootstrapped prefLabel from legacy name field |
| 19,621 | bootstrap_labels | name | iodine | — | Purged legacy name field to enforce prefLabel usage |
| 19,622 | bootstrap_labels | synonyms | ["AB1002924","AC1L1A2H","AC1Q4PSI","Actomar","Cadex","Cadex (TN)","Diiodine","Eranol","Fluorescent IEF-Marker pI 2.1","… | [] | Removed legacy synonyms field in favor of structured labels |
| 207,144 | default_context_mapping | context | — | {"dimension":"Resource","media":"Ground"} | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground |
| 207,145 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/reso-grou | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground |
| 219,725 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,553 | normalize_name_case | prefLabel | [{"@value":"iodine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Iodine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 227,059 | ec_cross_check | ec_numbers | [] | ["231-442-4"] | Resolved from EC-inventory: 231-442-4 from CAS 7553-56-2 |
| 245,404 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 245,405 | enrich_references | skos_definition | — | [{"@value":"Molecule comprising two covalently bonded iodine atoms with overall zero charge..","@language":"en","proven… | Merged ChEBI/PubChem definitions into skos:definition |
| 245,406 | enrich_references | references | [] | [{"@id":"beilstein:3587194","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['7553-56-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17606']; candidate_pubchem_cids=[807, 14284, 24841, 5360629]; selected_pubchem_cids=[807]; formula_similarity_expected=['I']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,577 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | rdkit_pre_consensus from 'II'; added: monoisotopic_mass |
| 256,936 | chebi_altlabels | altLabel | [] | [{"@value":"I2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | Added 4 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,991 | consensus_match | altLabel | [{"@value":"I2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | [{"@value":"I2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | group_key=iodine||dimension=Environmental > media=Ground > geography=Agricultural; cas=7553-56-2; added Common Chemistry CAS names as altLabel: Actomar, Biojodis, DentaPure DP 90, Diatomic iodine, Eranol, Iodel FD, Iodine (<sup>127</sup>I<sub>2</sub>), Iodine colloidal, Iodine crystals, Iodine molecule (I<sub>2</sub>), Iodine sublimed, Iodosteryl, Iosan Superdip, Jodosan, MeSH ID: D007455, NSC 42355, Tegodyne, Yoddar, eXIA 160; object_uuid=fo-351f592b1a189cf7 |
| 267,993 | consensus_match | cas_match_labels | — | {"7553-56-2":"exactMatch"} | group_key=iodine||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7553-56-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-351f592b1a189cf7: {'7553-56-2': 'exactMatch'} |
| 278,811 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'diiodine' |
| 285,595 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | rdkit_post_consensus from 'II'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,209 | strip_catalogue_altlabels | altLabel | [{"@value":"I2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | [{"@value":"I2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-fl… | Removed 2 catalogue altLabel value(s): 'NSC 42355' (registry code), 'eXIA 160' (grade code) |
| 384,627 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fe0acd60-3ddc-… | associations resolved on the elementary layer |
| 393,175 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | typed the way the ontology types it |
| 401,994 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 401,995 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["I2"],"atte… | the substance's answer, copied onto its flow |
| 403,854 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Iodine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Iodine","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichme… | element name from the flow object: Iodine |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/19620 | prefLabel | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v0 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v1 |
| ef:activity/change/20260820T1416470405690000/19621 | name | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v1 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v2 |
| ef:activity/change/20260820T1416470405690000/19622 | synonyms | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v2 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v3 |
| ef:activity/change/20260820T1416470405690000/207144 | context | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v3 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v4 |
| ef:activity/change/20260820T1416470405690000/207145 | context_iri | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v4 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v5 |
| ef:activity/change/20260820T1416470405690000/219725 | unit_iri | ef:agent/unit_normalization | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v5 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v6 |
| ef:activity/change/20260820T1416470405690000/225553 | prefLabel | ef:agent/normalize_name_case | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v6 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v7 |
| ef:activity/change/20260820T1416470405690000/227059 | ec_numbers | ef:agent/ec_cross_check | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v7 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v8 |
| ef:activity/change/20260820T1416470405690000/245404 | properties | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v8 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v9 |
| ef:activity/change/20260820T1416470405690000/245405 | skos_definition | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v9 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v10 |
| ef:activity/change/20260820T1416470405690000/245406 | references | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v10 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v11 |
| ef:activity/change/20260820T1416470405690000/253577 | properties | ef:agent/rdkit_pre_consensus | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v11 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v12 |
| ef:activity/change/20260820T1416470405690000/256936 | altLabel | ef:agent/chebi_altlabels | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v12 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v13 |
| ef:activity/change/20260820T1416470405690000/267991 | altLabel | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v13 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v14 |
| ef:activity/change/20260820T1416470405690000/267993 | cas_match_labels | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v14 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v15 |
| ef:activity/change/20260820T1416470405690000/278811 | properties | ef:agent/opsin_iupac | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v15 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v16 |
| ef:activity/change/20260820T1416470405690000/285595 | properties | ef:agent/rdkit_post_consensus | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v16 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v17 |
| ef:activity/change/20260820T1416470405690000/291209 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v17 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v18 |
| ef:activity/change/20260820T1416470405690000/384627 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v18 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v19 |
| ef:activity/change/20260820T1416470405690000/393175 | properties | ef:agent/normalise_property_values | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v19 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v20 |
| ef:activity/change/20260820T1416470405690000/401994 | types | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v20 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v21 |
| ef:activity/change/20260820T1416470405690000/401995 | properties | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v21 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v22 |
| ef:activity/change/20260820T1416470405690000/403854 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v22 | ef:flow/fe0acd60-3ddc-11dd-a7c1-0050c2490048/v23 |