Cyanide
Everything that changed this flow. Back to the flow
fe0acd60-3ddc-11dd-a7db-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=cyanide||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'57-12-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3b11cfaf5fca5f6c: {'57-12-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['57-12-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17514']; candidate_pubchem_cids=[311, 5975, 848548]; selected_pubchem_cids=[5975]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 25,331 | bootstrap_labels | prefLabel | — | [{"@value":"cyanide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 25,332 | bootstrap_labels | name | cyanide | — | Purged legacy name field to enforce prefLabel usage |
| 25,333 | bootstrap_labels | synonyms | ["AC1L1LJ3","CN(-)","CN-","CYANIDE ION","Carbon nitride ion (CN(sup 1-))","Carbon nitride ion (CN1-)","Cyanide (CN(sup… | [] | Removed legacy synonyms field in favor of structured labels |
| 207,188 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 207,189 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 220,980 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 226,575 | normalize_name_case | prefLabel | [{"@value":"cyanide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Cyanide","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 248,181 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 248,182 | enrich_references | skos_definition | — | [{"@value":"A pseudohalide anion that is the conjugate base of hydrogen cyanide.","@language":"en","provenance":{"prov:… | Merged ChEBI/PubChem definitions into skos:definition |
| 248,183 | enrich_references | references | [] | [{"@id":"gmelin:89","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consens… | Added references with provenance; cas_numbers=['57-12-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17514']; candidate_pubchem_cids=[311, 5975, 848548]; selected_pubchem_cids=[5975]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 254,352 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | rdkit_pre_consensus from '[C-]#N'; added: monoisotopic_mass |
| 257,374 | chebi_altlabels | altLabel | [] | [{"@value":"CN(-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Added 6 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 265,364 | consensus_match | altLabel | [{"@value":"CN(-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"CN(-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | group_key=cyanide||dimension=Environmental > media=Ground > geography=Agricultural; cas=57-12-5; added Common Chemistry CAS names as altLabel: Carbon nitride ion (CN<sup>1-</sup>), Cyanide (CN<sup>1-</sup>), Cyanide anion, Cyanide ion (CN(1-)), Cyanide ion(1-), Cyanide(1-), Cyanide(1-) ion, Hydrocyanic acid, ion(1-), Isocyanide, Nitrile anion; object_uuid=fo-3b11cfaf5fca5f6c |
| 265,365 | consensus_match | cas_match_labels | — | {"57-12-5":"exactMatch"} | group_key=cyanide||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'57-12-5': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3b11cfaf5fca5f6c: {'57-12-5': 'exactMatch'} |
| 279,709 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Cyanide' |
| 286,603 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | rdkit_post_consensus from '[C-]#N'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 293,196 | dedupe_altlabels | altLabel | [{"@value":"CN(-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"CN(-)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Deduplicated altLabel values and removed entries matching prefLabel |
| 384,629 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fe0acd60-3ddc-… | associations resolved on the elementary layer |
| 394,116 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CN","CN-"]… | typed the way the ontology types it |
| 403,613 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/MolecularAnion"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/25331 | prefLabel | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v0 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v1 |
| ef:activity/change/20260822T0600486828500000/25332 | name | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v1 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v2 |
| ef:activity/change/20260822T0600486828500000/25333 | synonyms | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v2 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v3 |
| ef:activity/change/20260822T0600486828500000/207188 | context | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v3 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v4 |
| ef:activity/change/20260822T0600486828500000/207189 | context_iri | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v4 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v5 |
| ef:activity/change/20260822T0600486828500000/220980 | unit_iri | ef:agent/unit_normalization | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v5 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v6 |
| ef:activity/change/20260822T0600486828500000/226575 | prefLabel | ef:agent/normalize_name_case | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v6 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v7 |
| ef:activity/change/20260822T0600486828500000/248181 | properties | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v7 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v8 |
| ef:activity/change/20260822T0600486828500000/248182 | skos_definition | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v8 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v9 |
| ef:activity/change/20260822T0600486828500000/248183 | references | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v9 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v10 |
| ef:activity/change/20260822T0600486828500000/254352 | properties | ef:agent/rdkit_pre_consensus | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v10 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v11 |
| ef:activity/change/20260822T0600486828500000/257374 | altLabel | ef:agent/chebi_altlabels | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v11 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v12 |
| ef:activity/change/20260822T0600486828500000/265364 | altLabel | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v12 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v13 |
| ef:activity/change/20260822T0600486828500000/265365 | cas_match_labels | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v13 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v14 |
| ef:activity/change/20260822T0600486828500000/279709 | properties | ef:agent/opsin_iupac | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v14 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v15 |
| ef:activity/change/20260822T0600486828500000/286603 | properties | ef:agent/rdkit_post_consensus | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v15 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v16 |
| ef:activity/change/20260822T0600486828500000/293196 | altLabel | ef:agent/dedupe_altlabels | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v16 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v17 |
| ef:activity/change/20260822T0600486828500000/384629 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v17 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v18 |
| ef:activity/change/20260822T0600486828500000/394116 | properties | ef:agent/normalise_property_values | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v18 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v19 |
| ef:activity/change/20260822T0600486828500000/403613 | types | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v19 | ef:flow/fe0acd60-3ddc-11dd-a7db-0050c2490048/v20 |