Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NP 03' (grade code)
prefLabel 3 bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case element name from the flow object: Lithium
cas_match_labels 1 consensus_match group_key=lithium||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7439-93-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-700b514edbb34f5b: {'7439-93-2': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['7439-93-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30145']; candidate_pubchem_cids=[28486, 62714, 3028194, 57518778]; selected_pubchem_cids=[3028194]; formula_similarity_expected=['Li']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
19,580 bootstrap_labels prefLabel [{"@value":"lithium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… Bootstrapped prefLabel from legacy name field
19,581 bootstrap_labels name lithium Purged legacy name field to enforce prefLabel usage
19,582 bootstrap_labels synonyms ["3Li","AB1003835","AC1MHL68","HSD690000","LITHIUM HYDRIDE","LTBB002851","Lithium compounds","Lithium hydride (LiH)","L… [] Removed legacy synonyms field in favor of structured labels
207,460 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
207,461 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
219,712 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,540 normalize_name_case prefLabel [{"@value":"lithium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… [{"@value":"Lithium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
245,368 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
245,369 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
245,370 enrich_references references [] [{"@id":"https://chem.echa.europa.eu/100.028.274","provenance":{"prov:wasGeneratedBy":"enrich_references.pubchem_identi… Added references with provenance; cas_numbers=['7439-93-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30145']; candidate_pubchem_cids=[28486, 62714, 3028194, 57518778]; selected_pubchem_cids=[3028194]; formula_similarity_expected=['Li']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,567 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… rdkit_pre_consensus from '[Li]'; added: monoisotopic_mass
256,924 chebi_altlabels altLabel [] [{"@value":"3Li","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,407 consensus_match altLabel [{"@value":"3Li","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"3Li","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… group_key=lithium||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=7439-93-2; added Common Chemistry CAS names as altLabel: Lectro Max Powder 150, LectroMax 100, Lithium atom, Lithium element, MeSH ID: D008094, NP 03; object_uuid=fo-700b514edbb34f5b
268,408 consensus_match cas_match_labels {"7439-93-2":"exactMatch"} group_key=lithium||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7439-93-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-700b514edbb34f5b: {'7439-93-2': 'exactMatch'}
278,799 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Lithium'
285,583 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… rdkit_post_consensus from '[Li]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
291,201 strip_catalogue_altlabels altLabel [{"@value":"3Li","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"3Li","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Removed 1 catalogue altLabel value(s): 'NP 03' (grade code)
384,785 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fe0acd60-3ddc-… associations resolved on the elementary layer
393,163 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… typed the way the ontology types it
401,970 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalElement"] the substance's answer, copied onto its flow
401,971 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li"],"atte… the substance's answer, copied onto its flow
403,843 flow_layers.pubchem_element_enrichment prefLabel [{"@value":"Lithium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… [{"@value":"Lithium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichm… element name from the flow object: Lithium

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/19580 prefLabel ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v0 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v1
ef:activity/change/20260820T0738569779880000/19581 name ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v1 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v2
ef:activity/change/20260820T0738569779880000/19582 synonyms ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v2 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v3
ef:activity/change/20260820T0738569779880000/207460 context ef:agent/default_context_mapping ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v3 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v4
ef:activity/change/20260820T0738569779880000/207461 context_iri ef:agent/default_context_mapping ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v4 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v5
ef:activity/change/20260820T0738569779880000/219712 unit_iri ef:agent/unit_normalization ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v5 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v6
ef:activity/change/20260820T0738569779880000/225540 prefLabel ef:agent/normalize_name_case ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v6 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v7
ef:activity/change/20260820T0738569779880000/245368 properties ef:agent/enrich_references ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v7 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v8
ef:activity/change/20260820T0738569779880000/245369 skos_definition ef:agent/enrich_references ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v8 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v9
ef:activity/change/20260820T0738569779880000/245370 references ef:agent/enrich_references ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v9 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v10
ef:activity/change/20260820T0738569779880000/253567 properties ef:agent/rdkit_pre_consensus ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v10 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v11
ef:activity/change/20260820T0738569779880000/256924 altLabel ef:agent/chebi_altlabels ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v11 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v12
ef:activity/change/20260820T0738569779880000/268407 altLabel ef:agent/consensus_match ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v12 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v13
ef:activity/change/20260820T0738569779880000/268408 cas_match_labels ef:agent/consensus_match ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v13 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v14
ef:activity/change/20260820T0738569779880000/278799 properties ef:agent/opsin_iupac ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v14 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v15
ef:activity/change/20260820T0738569779880000/285583 properties ef:agent/rdkit_post_consensus ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v15 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v16
ef:activity/change/20260820T0738569779880000/291201 altLabel ef:agent/strip_catalogue_altlabels ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v16 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v17
ef:activity/change/20260820T0738569779880000/384785 concept_associations ef:agent/carry_associations_onto_flows ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v17 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v18
ef:activity/change/20260820T0738569779880000/393163 properties ef:agent/normalise_property_values ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v18 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v19
ef:activity/change/20260820T0738569779880000/401970 types ef:agent/link_flows_to_their_substance ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v19 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v20
ef:activity/change/20260820T0738569779880000/401971 properties ef:agent/link_flows_to_their_substance ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v20 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v21
ef:activity/change/20260820T0738569779880000/403843 prefLabel ef:agent/flow_layers.pubchem_element_enrichment ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v21 ef:flow/fe0acd60-3ddc-11dd-a860-0050c2490048/v22

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