Consensus flow list

By field

14 fields
Field Changes Written by Latest note
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 7 catalogue altLabel value(s): 'Compound 4049' (trade name), 'ENT 17034' (grade code), 'IFO 13140' (grade code), 'Insecticide 4049' (trade name), 'NSC 6524' (registry code), 'SF 60' (grade code), 'TM 4049' (grade code)
properties 3 normalise_property_values, opsin_iupac, rdkit_post_consensus typed the way the ontology types it
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=malathion||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'121-75-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-49b8445ab79427d3: {'121-75-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['121-75-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_6651']; candidate_pubchem_cids=[4004, 10892866, 12358970]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

19
# Step Field From To Why
7,677 bootstrap_labels prefLabel [{"@value":"malathion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… Bootstrapped prefLabel from legacy name field
7,678 bootstrap_labels name malathion Purged legacy name field to enforce prefLabel usage
7,679 bootstrap_labels synonyms ["((Dimethoxyphosphinothioyl)thio)butanedioic acid diethyl ester","0,0-Dimethyl S-[1,2-bis(ethoxycarbonyl)ethyl] dithio… [] Removed legacy synonyms field in favor of structured labels
207,480 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
207,481 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
215,908 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,894 normalize_name_case prefLabel [{"@value":"malathion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… [{"@value":"Malathion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
234,538 enrich_references skos_definition [{"@value":"A racemate comprising equimolar amounts of (R) and (S)-malathion. It is a broad spectrum organophosphate pr… Merged ChEBI/PubChem definitions into skos:definition
234,539 enrich_references references [] [{"@id":"drugcentral:1626","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['121-75-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_6651']; candidate_pubchem_cids=[4004, 10892866, 12358970]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
255,423 chebi_altlabels altLabel [] [{"@value":"Karbofos","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… Added 14 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,517 consensus_match altLabel [{"@value":"Karbofos","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… [{"@value":"Karbofos","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… group_key=malathion||dimension=Environmental > media=Water > water_body=Long-term; cas=121-75-5; added Common Chemistry CAS names as altLabel: 8059HC, <em>S</em>-[1,2-Bis(carbethoxy)ethyl] <em>O</em>,<em>O</em>-dimethyl dithiophosphate, <em>S</em>-[1,2-Bis(ethoxycarbonyl)ethyl] <em>O</em>,<em>O</em>-dimethyl phosphorodithioate, <em>S</em>-[1,2-Bis(ethoxycarbonyl)ethyl] <em>O</em>,<em>O</em>-dimethyl thiophosphate, American Cyanamid 4,049, Atrapa, Butanedioic acid, 2-[(dimethoxyphosphinothioyl)thio]-, 1,4-diethyl ester, Butanedioic acid, [(dimethoxyphosphinothioyl)thio]-, diethyl ester, Carbetovur, Carbetox, Carbofos, Cimexan, Compound 4049, Cythion, Derbac M, Diethyl mercaptosuccinate <em>S</em>-ester with <em>O</em>,<em>O</em>-dimethyl phosphorodithioate, ENT 17,034, ENT 17034, Ethiolacar, Etiol, Extermathion, Forthion, Fosfothion, Fosfotion, Fyfanon, Gammaxine, Hi-Yield, Hilthion, Hymal, IFO 13140, Insecticide 4049, Insecticide no. 4049, Kunamala, Malafor, Malamar, Malamar 50, Malapron, Malasol, Malaspray, Malataf, Malataf 57EC, Malathine, Malathion E 50, Malathion LV Concentrate, Malathion ULV, Malathyl, Malathyne, Malatol, Malatol 500CE, Mavidan, MeSH ID: D008294, Moscarda, NSC 6524, Nassrlathion, Oleophosphothion, Organoderm, Ortho Malathion, Ovide, Phosphothion, Prioderm, Radotion, Radotion E 50, Radotion P 5, SF 60, Sadofos, Sadophos, Security, Siptox I, Succinic acid, mercapto-, diethyl ester, <em>S</em>-ester with <em>O</em>,<em>O</em>-dimethyl phosphorodithioate, Suleo M, Sumitox, TAK, TAK (pesticide), TM 4049, Vetiol, Zithiol; object_uuid=fo-49b8445ab79427d3
268,518 consensus_match cas_match_labels {"121-75-5":"exactMatch"} group_key=malathion||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'121-75-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-49b8445ab79427d3: {'121-75-5': 'exactMatch'}
275,611 opsin_iupac properties {} {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'O,O-dimethyl S-(1,2-dicarbethoxyethyl) dithiophosphate'
282,143 rdkit_post_consensus properties {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… rdkit_post_consensus from 'CCOC(=O)CC(SP(=S)(OC)OC)C(=O)OCC'; added: inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass; confirmed: smiles_string, inchi2d_string
288,858 strip_catalogue_altlabels altLabel [{"@value":"Karbofos","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… [{"@value":"Karbofos","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… Removed 7 catalogue altLabel value(s): 'Compound 4049' (trade name), 'ENT 17034' (grade code), 'IFO 13140' (grade code), 'Insecticide 4049' (trade name), 'NSC 6524' (registry code), 'SF 60' (grade code), 'TM 4049' (grade code)
384,795 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fe0acd60-3ddc-… associations resolved on the elementary layer
389,934 normalise_property_values properties {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… typed the way the ontology types it
397,320 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
397,321 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_22153","rdfs:label":"acaricide","http://www.w3.org/2004/02/skos/core#defi… the substance's answer, copied onto its flow

PROV-O trail

19 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/7677 prefLabel ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v0 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v1
ef:activity/change/20260820T1416470405690000/7678 name ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v1 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v2
ef:activity/change/20260820T1416470405690000/7679 synonyms ef:agent/bootstrap_labels ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v2 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v3
ef:activity/change/20260820T1416470405690000/207480 context ef:agent/default_context_mapping ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v3 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v4
ef:activity/change/20260820T1416470405690000/207481 context_iri ef:agent/default_context_mapping ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v4 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v5
ef:activity/change/20260820T1416470405690000/215908 unit_iri ef:agent/unit_normalization ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v5 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v6
ef:activity/change/20260820T1416470405690000/222894 prefLabel ef:agent/normalize_name_case ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v6 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v7
ef:activity/change/20260820T1416470405690000/234538 skos_definition ef:agent/enrich_references ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v7 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v8
ef:activity/change/20260820T1416470405690000/234539 references ef:agent/enrich_references ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v8 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v9
ef:activity/change/20260820T1416470405690000/255423 altLabel ef:agent/chebi_altlabels ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v9 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v10
ef:activity/change/20260820T1416470405690000/268517 altLabel ef:agent/consensus_match ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v10 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v11
ef:activity/change/20260820T1416470405690000/268518 cas_match_labels ef:agent/consensus_match ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v11 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v12
ef:activity/change/20260820T1416470405690000/275611 properties ef:agent/opsin_iupac ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v12 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v13
ef:activity/change/20260820T1416470405690000/282143 properties ef:agent/rdkit_post_consensus ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v13 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v14
ef:activity/change/20260820T1416470405690000/288858 altLabel ef:agent/strip_catalogue_altlabels ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v14 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v15
ef:activity/change/20260820T1416470405690000/384795 concept_associations ef:agent/carry_associations_onto_flows ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v15 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v16
ef:activity/change/20260820T1416470405690000/389934 properties ef:agent/normalise_property_values ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v16 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v17
ef:activity/change/20260820T1416470405690000/397320 types ef:agent/link_flows_to_their_substance ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v17 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v18
ef:activity/change/20260820T1416470405690000/397321 roles ef:agent/link_flows_to_their_substance ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v18 ef:flow/fe0acd60-3ddc-11dd-a86b-0050c2490048/v19

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