Mercury
Everything that changed this flow. Back to the flow
fe0acd60-3ddc-11dd-a8cb-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Mercury |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=mercury||dimension=Environmental > media=Ground > geography=Agricultural; cas=7439-97-6; added Common Chemistry CAS names as altLabel: Blue ointment, Diluted mercurial ointment, MeSH ID: D008628, Mercurius, Mercurius solubilis, Mercurius vivus, Mercury element; object_uuid=fo-087268a3358b25bd |
| cas_match_labels | 1 | consensus_match | group_key=mercury||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7439-97-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-087268a3358b25bd: {'7439-97-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7439-97-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16170', 'http://purl.obolibrary.org/obo/CHEBI_25195']; candidate_pubchem_cids=[23931, 26623]; selected_pubchem_cids=[23931]; formula_similarity_expected=['Hg']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 7,690 | bootstrap_labels | prefLabel | — | [{"@value":"mercury","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 7,691 | bootstrap_labels | name | mercury | — | Purged legacy name field to enforce prefLabel usage |
| 7,692 | bootstrap_labels | synonyms | ["80Hg","AC1L2N3D","Colloidal mercury","HG0","Hg","Hgn","Hydrargyrum","Kwik","Liquid silver","Marcero","Mercure","Mercu… | [] | Removed legacy synonyms field in favor of structured labels |
| 207,650 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 207,651 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-noag | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 215,907 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,893 | normalize_name_case | prefLabel | [{"@value":"mercury","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Mercury","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 234,543 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 234,544 | enrich_references | skos_definition | — | [{"@value":"Elemental mercury of oxidation state zero.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_re… | Merged ChEBI/PubChem definitions into skos:definition |
| 234,545 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J263.679D","provenance":{"prov:wasGeneratedBy":"enrich_referen… | Added references with provenance; cas_numbers=['7439-97-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16170', 'http://purl.obolibrary.org/obo/CHEBI_25195']; candidate_pubchem_cids=[23931, 26623]; selected_pubchem_cids=[23931]; formula_similarity_expected=['Hg']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,429 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | rdkit_pre_consensus from '[Hg]'; added: monoisotopic_mass |
| 255,418 | chebi_altlabels | altLabel | [] | [{"@value":"80Hg","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 14 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 268,578 | consensus_match | altLabel | [{"@value":"80Hg","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"80Hg","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=mercury||dimension=Environmental > media=Ground > geography=Agricultural; cas=7439-97-6; added Common Chemistry CAS names as altLabel: Blue ointment, Diluted mercurial ointment, MeSH ID: D008628, Mercurius, Mercurius solubilis, Mercurius vivus, Mercury element; object_uuid=fo-087268a3358b25bd |
| 268,579 | consensus_match | cas_match_labels | — | {"7439-97-6":"exactMatch"} | group_key=mercury||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7439-97-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-087268a3358b25bd: {'7439-97-6': 'exactMatch'} |
| 275,592 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Mercury' |
| 282,122 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | rdkit_post_consensus from '[Hg]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 384,853 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fe0acd60-3ddc-… | associations resolved on the elementary layer |
| 389,908 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | typed the way the ontology types it |
| 397,295 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 397,296 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Hg"],"atte… | the substance's answer, copied onto its flow |
| 403,772 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Mercury","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Mercury","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichm… | element name from the flow object: Mercury |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1812399309960000/7690 | prefLabel | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v0 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v1 |
| ef:activity/change/20260820T1812399309960000/7691 | name | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v1 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v2 |
| ef:activity/change/20260820T1812399309960000/7692 | synonyms | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v2 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v3 |
| ef:activity/change/20260820T1812399309960000/207650 | context | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v3 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v4 |
| ef:activity/change/20260820T1812399309960000/207651 | context_iri | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v4 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v5 |
| ef:activity/change/20260820T1812399309960000/215907 | unit_iri | ef:agent/unit_normalization | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v5 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v6 |
| ef:activity/change/20260820T1812399309960000/222893 | prefLabel | ef:agent/normalize_name_case | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v6 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v7 |
| ef:activity/change/20260820T1812399309960000/234543 | properties | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v7 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v8 |
| ef:activity/change/20260820T1812399309960000/234544 | skos_definition | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v8 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v9 |
| ef:activity/change/20260820T1812399309960000/234545 | references | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v9 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v10 |
| ef:activity/change/20260820T1812399309960000/250429 | properties | ef:agent/rdkit_pre_consensus | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v10 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v11 |
| ef:activity/change/20260820T1812399309960000/255418 | altLabel | ef:agent/chebi_altlabels | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v11 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v12 |
| ef:activity/change/20260820T1812399309960000/268578 | altLabel | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v12 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v13 |
| ef:activity/change/20260820T1812399309960000/268579 | cas_match_labels | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v13 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v14 |
| ef:activity/change/20260820T1812399309960000/275592 | properties | ef:agent/opsin_iupac | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v14 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v15 |
| ef:activity/change/20260820T1812399309960000/282122 | properties | ef:agent/rdkit_post_consensus | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v15 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v16 |
| ef:activity/change/20260820T1812399309960000/384853 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v16 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v17 |
| ef:activity/change/20260820T1812399309960000/389908 | properties | ef:agent/normalise_property_values | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v17 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v18 |
| ef:activity/change/20260820T1812399309960000/397295 | types | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v18 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v19 |
| ef:activity/change/20260820T1812399309960000/397296 | properties | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v19 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v20 |
| ef:activity/change/20260820T1812399309960000/403772 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v20 | ef:flow/fe0acd60-3ddc-11dd-a8cb-0050c2490048/v21 |