Selenium
Everything that changed this flow. Back to the flow
fe0acd60-3ddc-11dd-abf3-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'C.I. 77805' (registry code), 'Selsaf 2000' (trade name) |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Selenium |
| cas_match_labels | 1 | consensus_match | group_key=selenium||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7782-49-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-476008ff1af94efb: {'7782-49-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7782-49-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27568', 'http://purl.obolibrary.org/obo/CHEBI_36904']; candidate_pubchem_cids=[533, 6326970, 6397996]; selected_pubchem_cids=[6326970]; formula_similarity_expected=['Se']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 8,058 | bootstrap_labels | prefLabel | — | [{"@value":"selenium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Bootstrapped prefLabel from legacy name field |
| 8,059 | bootstrap_labels | name | selenium | — | Purged legacy name field to enforce prefLabel usage |
| 8,060 | bootstrap_labels | synonyms | ["34Se","AC1O3F20","AC1Q22Z4","C.I. 77805","CI 77805","CPD-11270","CPD-678","Colloidal selenium","Dihydrogen selenide",… | [] | Removed legacy synonyms field in favor of structured labels |
| 209,210 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 209,211 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 216,032 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,998 | normalize_name_case | prefLabel | [{"@value":"selenium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | [{"@value":"Selenium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 234,891 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 234,892 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 234,893 | enrich_references | references | [] | [{"@id":"foodb.food:FDB013400","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedT… | Added references with provenance; cas_numbers=['7782-49-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27568', 'http://purl.obolibrary.org/obo/CHEBI_36904']; candidate_pubchem_cids=[533, 6326970, 6397996]; selected_pubchem_cids=[6326970]; formula_similarity_expected=['Se']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,534 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | rdkit_pre_consensus from '[Se]'; added: monoisotopic_mass |
| 255,497 | chebi_altlabels | altLabel | [] | [{"@value":"34Se","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 5 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 271,609 | consensus_match | altLabel | [{"@value":"34Se","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"34Se","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=selenium||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); cas=7782-49-2; added Common Chemistry CAS names as altLabel: B-TRAXIM Se, C.I. 77805, MeSH ID: D012643, Selenium (Se), Selsaf 2000, Serendipita MKCA6-3; object_uuid=fo-476008ff1af94efb |
| 271,610 | consensus_match | cas_match_labels | — | {"7782-49-2":"exactMatch"} | group_key=selenium||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7782-49-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-476008ff1af94efb: {'7782-49-2': 'exactMatch'} |
| 275,712 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Selenium' |
| 282,260 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | rdkit_post_consensus from '[Se]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,932 | strip_catalogue_altlabels | altLabel | [{"@value":"34Se","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"34Se","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Removed 2 catalogue altLabel value(s): 'C.I. 77805' (registry code), 'Selsaf 2000' (trade name) |
| 385,664 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/fe0acd60-3ddc-… | associations resolved on the elementary layer |
| 390,049 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | typed the way the ontology types it |
| 397,492 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 397,493 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Se"],"atte… | the substance's answer, copied onto its flow |
| 403,815 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Selenium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | [{"@value":"Selenium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrich… | element name from the flow object: Selenium |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/8058 | prefLabel | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v0 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v1 |
| ef:activity/change/20260820T1416470405690000/8059 | name | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v1 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v2 |
| ef:activity/change/20260820T1416470405690000/8060 | synonyms | ef:agent/bootstrap_labels | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v2 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v3 |
| ef:activity/change/20260820T1416470405690000/209210 | context | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v3 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v4 |
| ef:activity/change/20260820T1416470405690000/209211 | context_iri | ef:agent/default_context_mapping | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v4 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v5 |
| ef:activity/change/20260820T1416470405690000/216032 | unit_iri | ef:agent/unit_normalization | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v5 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v6 |
| ef:activity/change/20260820T1416470405690000/222998 | prefLabel | ef:agent/normalize_name_case | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v6 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v7 |
| ef:activity/change/20260820T1416470405690000/234891 | properties | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v7 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v8 |
| ef:activity/change/20260820T1416470405690000/234892 | skos_definition | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v8 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v9 |
| ef:activity/change/20260820T1416470405690000/234893 | references | ef:agent/enrich_references | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v9 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v10 |
| ef:activity/change/20260820T1416470405690000/250534 | properties | ef:agent/rdkit_pre_consensus | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v10 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v11 |
| ef:activity/change/20260820T1416470405690000/255497 | altLabel | ef:agent/chebi_altlabels | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v11 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v12 |
| ef:activity/change/20260820T1416470405690000/271609 | altLabel | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v12 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v13 |
| ef:activity/change/20260820T1416470405690000/271610 | cas_match_labels | ef:agent/consensus_match | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v13 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v14 |
| ef:activity/change/20260820T1416470405690000/275712 | properties | ef:agent/opsin_iupac | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v14 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v15 |
| ef:activity/change/20260820T1416470405690000/282260 | properties | ef:agent/rdkit_post_consensus | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v15 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v16 |
| ef:activity/change/20260820T1416470405690000/288932 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v16 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v17 |
| ef:activity/change/20260820T1416470405690000/385664 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v17 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v18 |
| ef:activity/change/20260820T1416470405690000/390049 | properties | ef:agent/normalise_property_values | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v18 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v19 |
| ef:activity/change/20260820T1416470405690000/397492 | types | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v19 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v20 |
| ef:activity/change/20260820T1416470405690000/397493 | properties | ef:agent/link_flows_to_their_substance | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v20 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v21 |
| ef:activity/change/20260820T1416470405690000/403815 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v21 | ef:flow/fe0acd60-3ddc-11dd-abf3-0050c2490048/v22 |