Malic acid
Everything that changed this flow. Back to the flow
ff319649-bdb5-4b38-b2f0-2f3c6102a896
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| altLabel | 5 | chebi_altlabels, consensus_match, strip_catalogue_altlabels, strip_cross_object_altlabels | Removed 4 catalogue altLabel value(s): 'DN 1992' (grade code), 'E 296' (grade code), 'FDA 2018' (grade code), 'NSC 25941' (registry code) |
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=6915-15-7; cc_chebi_agreed_name='Malic acid'; object_uuid=fo-2b6bf2a7d541f880 |
| cas_match_labels | 1 | consensus_match | group_key=2-hydroxybutanedioicacid||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'6915-15-7': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-2b6bf2a7d541f880: {'6915-15-7': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['6915-15-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_6650']; candidate_pubchem_cids=[525, 12047, 222656, 279158, 5459792, 20130941]; selected_pubchem_cids=[525]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 4,320 | bootstrap_labels | prefLabel | — | [{"@value":"2-hydroxybutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | Bootstrapped prefLabel from legacy name field |
| 4,321 | bootstrap_labels | name | 2-hydroxybutanedioic acid | — | Purged legacy name field to enforce prefLabel usage |
| 4,322 | bootstrap_labels | synonyms | ["organic","malicacid"] | [] | Removed legacy synonyms field in favor of structured labels |
| 212,842 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 212,843 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-aicrhe | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 214,782 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,086 | normalize_name_case | prefLabel | [{"@value":"2-hydroxybutanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | [{"@value":"2-hydroxybutanedioic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 231,336 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 231,337 | enrich_references | skos_definition | — | [{"@value":"A 2-hydroxydicarboxylic acid that is succinic acid in which one of the hydrogens attached to a carbon is re… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,338 | enrich_references | references | [] | [{"@id":"gmelin:3325","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['6915-15-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_6650']; candidate_pubchem_cids=[525, 12047, 222656, 279158, 5459792, 20130941]; selected_pubchem_cids=[525]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,514 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | rdkit_pre_consensus from 'C(C(C(=O)O)O)C(=O)O'; added: monoisotopic_mass |
| 254,922 | chebi_altlabels | altLabel | [] | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 257,421 | strip_cross_object_altlabels | altLabel | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'Malic acid' |
| 260,939 | consensus_match | prefLabel | [{"@value":"2-hydroxybutanedioic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | [{"@value":"Malic acid","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"cons… | cas=6915-15-7; cc_chebi_agreed_name='Malic acid'; object_uuid=fo-2b6bf2a7d541f880 |
| 260,940 | consensus_match | altLabel | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | cas=6915-15-7; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-2b6bf2a7d541f880 |
| 260,941 | consensus_match | altLabel | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | group_key=2-hydroxybutanedioicacid||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=6915-15-7; added Common Chemistry CAS names as altLabel: (±)-Malic acid, <em>R</em>,<em>S</em>(±)-Malic acid, Butanedioic acid, 2-hydroxy-, Butanedioic acid, hydroxy-, DN 1992, Deoxytetraric acid, E 296, FDA 2018, Fuso M, MeSH ID: D008293, Monohydroxybutanedioic acid, Musashi-no-Ringosan, NSC 25941, Nanoveson M, Pomalus Acid, Purac MA, Purac Powder MA, Xeros, α-Hydroxysuccinic acid; object_uuid=fo-2b6bf2a7d541f880 |
| 260,942 | consensus_match | cas_match_labels | — | {"6915-15-7":"exactMatch"} | group_key=2-hydroxybutanedioicacid||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'6915-15-7': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-2b6bf2a7d541f880: {'6915-15-7': 'exactMatch'} |
| 274,645 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Malic acid' |
| 281,101 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | rdkit_post_consensus from 'O=C(O)CC(O)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,137 | strip_catalogue_altlabels | altLabel | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"2-Hydroxyethane-1,2-dicarboxylic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Removed 4 catalogue altLabel value(s): 'DN 1992' (grade code), 'E 296' (grade code), 'FDA 2018' (grade code), 'NSC 25941' (registry code) |
| 387,464 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/ff319649-bdb5-… | associations resolved on the elementary layer |
| 388,951 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H6O5"],"… | typed the way the ontology types it |
| 395,901 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/4320 | prefLabel | ef:agent/bootstrap_labels | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v0 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v1 |
| ef:activity/change/20260822T0600486828500000/4321 | name | ef:agent/bootstrap_labels | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v1 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v2 |
| ef:activity/change/20260822T0600486828500000/4322 | synonyms | ef:agent/bootstrap_labels | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v2 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v3 |
| ef:activity/change/20260822T0600486828500000/212842 | context | ef:agent/default_context_mapping | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v3 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v4 |
| ef:activity/change/20260822T0600486828500000/212843 | context_iri | ef:agent/default_context_mapping | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v4 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v5 |
| ef:activity/change/20260822T0600486828500000/214782 | unit_iri | ef:agent/unit_normalization | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v5 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v6 |
| ef:activity/change/20260822T0600486828500000/222086 | prefLabel | ef:agent/normalize_name_case | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v6 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v7 |
| ef:activity/change/20260822T0600486828500000/231336 | properties | ef:agent/enrich_references | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v7 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v8 |
| ef:activity/change/20260822T0600486828500000/231337 | skos_definition | ef:agent/enrich_references | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v8 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v9 |
| ef:activity/change/20260822T0600486828500000/231338 | references | ef:agent/enrich_references | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v9 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v10 |
| ef:activity/change/20260822T0600486828500000/249514 | properties | ef:agent/rdkit_pre_consensus | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v10 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v11 |
| ef:activity/change/20260822T0600486828500000/254922 | altLabel | ef:agent/chebi_altlabels | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v11 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v12 |
| ef:activity/change/20260822T0600486828500000/257421 | altLabel | ef:agent/strip_cross_object_altlabels | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v12 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v13 |
| ef:activity/change/20260822T0600486828500000/260939 | prefLabel | ef:agent/consensus_match | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v13 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v14 |
| ef:activity/change/20260822T0600486828500000/260940 | altLabel | ef:agent/consensus_match | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v14 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v15 |
| ef:activity/change/20260822T0600486828500000/260941 | altLabel | ef:agent/consensus_match | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v15 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v16 |
| ef:activity/change/20260822T0600486828500000/260942 | cas_match_labels | ef:agent/consensus_match | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v16 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v17 |
| ef:activity/change/20260822T0600486828500000/274645 | properties | ef:agent/opsin_iupac | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v17 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v18 |
| ef:activity/change/20260822T0600486828500000/281101 | properties | ef:agent/rdkit_post_consensus | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v18 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v19 |
| ef:activity/change/20260822T0600486828500000/288137 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v19 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v20 |
| ef:activity/change/20260822T0600486828500000/387464 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v20 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v21 |
| ef:activity/change/20260822T0600486828500000/388951 | properties | ef:agent/normalise_property_values | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v21 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v22 |
| ef:activity/change/20260822T0600486828500000/395901 | types | ef:agent/link_flows_to_their_substance | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v22 | ef:flow/ff319649-bdb5-4b38-b2f0-2f3c6102a896/v23 |